*Yen Ting Wong，Michael A Tayeb，Timothy C. Stone，Laurence B. Lovat，Andrew E. Teschendorff，Rafal Iwasiow，Jeffrey M Craig. A comparison of epithelial cell content of oral samples estimated using cytology and DNA methylation. Epigenetics. 2021 Jul 13
*Zhen Yang, Feng Xu, Haizhou Wang, Andrew E Teschendorff, Feng Xie, Yungang He. Pan-cancer characterization of long non-coding RNA and DNA methylation mediated transcriptional dysregulation. EBioMedicine 2021 May 24
*Andrew E. Teschendorff, Andrew P. Feinberg. Statistical mechanics meets single-cell biology. Nat Rev Genet 19 April 2021
*Andrew E Teschendorff, Alok K Maity, Xue Hu, Chen Weiyan, Matthias Lechner.Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data.BIOINFORMATICS 27 November 2020
*Andrew E. Teschendorff,Ning Wang.Improved detection of tumor suppressor events in single-cell RNA-Seq data. npj Genomic Medicine volume 5, Article number: 43 (2020) 07 October 2020
*Chenglong You, Sijie Wu, Shijie C. Zheng, Tianyu Zhu, Han Jing, Ken Flagg, Guangyu Wang, Li Jin, Sijia Wang, Andrew E. Teschendorff.A cell-type deconvolution meta-analysis of whole blood EWAS reveals lineage-specific smoking-associated DNA methylation changes. Nature Communications volume 11, Article number: 4779 (2020) 2020 Sep 22
*Andrew E. Teschendorff,Tianyu Zhu,Charles E. Breeze,Stephan Beck. EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data. Genome Biology 21, Article number: 221 (2020) 04 Sep 2020
* Andrew E. Teschendorff. A comparison of epigenetic mitotic-like clocks for cancer risk prediction. Genome Medicine volume 12, Article number: 56 (2020)
* Bell, C.G., Lowe, R., Adams, P.D. et al. DNA methylation aging clocks: challenges and recommendations. Genome Biol 20, 249 (2019) doi:10.1186/s13059-019-1824-y
* Shijie C Zheng, Charles E Breeze, Stephan Beck, Danyue Dong, Tianyu Zhu, Liangxiao Ma, Wei Ye, Guoqing Zhang, Andrew E Teschendorff, EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI, Bioinformatics, , btz833
* Battram T, Richmond RC, Baglietto L, Haycock PC, Perduca V, Bojesen SE, Gaunt TR, Hemani G, Guida F, Carreras-Torres R, Hung R, Amos CI, Freeman JR, Sandanger TM, Nost TH, Nordestgaard BG, Teschendorff AE, Polidoro S, Vineis P, Severi G, Hodge AM, Giles GG, Grankvist K, Johansson MB, Johansson M, Davey Smith G, Relton CL. Appraising the causal relevance of DNA methylation for risk of lung cancer. Int J Epidemiol. 2019 Sep 24. pii: dyz190. doi: 10.1093/ije/dyz190. [Epub ahead of print] PubMed PMID: 31549173.
* Chen W, Morabito SJ, Kessenbrock K, Enver T, Meyer KB, Teschendorff AE. Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome. Communications Biology. 2019 Aug 9.
* Breeze CE, Reynolds AP, van Dongen J, Dunham I, Lazar J, Neph S, Vierstra J, Bourque G, Teschendorff AE, Stamatoyannopoulos JA, Beck S. eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. Bioinformatics. 2019 Jun 4.
* Teschendorff AE. Avoiding common pitfalls in machine learning omic data science. Nat Materials. 2019 May 16.
* Chen W, Teschendorff AE. Estimating Differentiation Potency of Single Cells Using Single-Cell Entropy (SCENT). Methods Mol Biol. 2019 Febuary 14.
* Dong D, Tian Y, Zheng SC, Teschendorff AE. ebGSEA: An improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies the article. Bioinformatics. 2019 January 31.
* Wang Y, Qian M, Ruan P, Teschendorff AE, Wang S. Detection of epigenetic field defects using a weighted epigenetic distance-based method. Nucleic Acids Res. 2019 January 10.
* Wang Y, Teschendorff AE, Widschwendter M, Wang S. Accounting for differential variability in detecting differentially methylated regions. Brief Bioinform. 2019 January 18.
* Zheng SC, Breeze CE, Beck S, Teschendorff AE. Identification of differentially methylated cell types in epigenome-wide association studies. Nat Methods. 2018 Nov 30. doi: 10.1038/s41592-018-0213-x.
* Zhu T, Zheng SC, Paul DS, Horvath S, Teschendorff AE. Cell and tissue type independent age-associated DNA methylation changes are not rare but common. Aging (Albany NY). 2018; 10:3541-3557.
* Wang Y, Qian M, Ruan P, Teschendorff AE, Wang S. Detection of epigenetic field defects using a weighted epigenetic distance-based method. Nucleic Acids Res. 2018 Oct 10. doi: 10.1093/nar/gky882. [Epub ahead of print] PMID: 30304472
* Shi J, Teschendorff AE, Chen W, Chen L, Li T. Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures. Brief Bioinform. 2018 Oct 5. doi: 10.1093/bib/bby093. [Epub ahead of print] PubMed PMID: 30289442.
* Teschendorff AE. Epigenetic clocks galore: a new improved clock predicts age-acceleration in Hutchinson Gilford Progeria Syndrome patients. Aging (Albany NY). 2018 Aug 21;10(8):1799-1800. doi: 10.18632/aging.101533. PubMed PMID: 30130743, PubMed Central PMCID: PMC6128420.
* Zheng SC, Webster AP, Dong D, Feber A, Graham DG, Sullivan R, Jevons S, Lovat LB, Beck S, Widschwendter M, Teschendorff AE. A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix. Epigenomics. 2018 Jul;10(7):925-940. doi: 10.2217/epi-2018-0037. Epub 2018 Apr 25.
* Teschendorff AE, Jing H, Paul DS, Virta J, Nordhausen K. Tensorial blind source separation for improved analysis of multi-omic data. Genome Biol. 2018 Jun 8;19(1):76. doi: 10.1186/s13059-018-1455-8. PubMed PMID: 29884221.
* Gao Y, Widschwendter M, Teschendorff AE. DNA Methylation Patterns in Normal Tissue Correlate more Strongly with Breast Cancer Status than Copy-Number Variants. EBioMedicine. 2018 May;31:243-252. doi: 10.1016/j.ebiom.2018.04.025. PubMed PMID: 29735413.
* Teschendorff AE, Relton CL. Statistical and integrative system-level analysis of DNA methylation data. Nat Rev Genet. 2018 Mar;19(3):129-147. doi: 10.1038/nrg.2017.86. Epub 2017 Nov 13.
* Tang W, Wan S, Yang Z, Teschendorff AE, Zou Q. Tumor Origin Detection with Tissue-Specific miRNA and DNA methylation Markers. Bioinformatics. 2018 Feb 1;34(3):398-406. doi: 10.1093/bioinformatics/btx622.
* Chen Y, Widschwendter M, Teschendorff AE. Systems-epigenomics inference of transcription factor activity implicates aryl-hydrocarbon-receptor inactivation as a key event in lung cancer development. Genome Biol. 2017 Dec 20;18(1):236. doi: 10.1186/s13059-017-1366-0. PMID: 29262847
* Widschwendter M, Zikan M, Wahl B, Lempiäinen H, Paprotka T, Evans I, Jones A, Ghazali S, Reisel D, Eichner J, Rujan T, Yang Z, Teschendorff AE, Ryan A, Cibula D, Menon U, Wittenberger T. The potential of circulating tumor DNA methylation analysis for the early detection and management of ovarian cancer. Genome Med. 2017 Dec 22;9(1):116. doi: 10.1186/s13073-017-0500-7. PMID: 29268796
* Simpkin AJ, Cooper R, Howe LD, Relton CL, Davey Smith G, Teschendorff A, Widschwendter M, Wong A, Kuh D, Hardy R. Are objective measures of physical capability related to accelerated epigenetic age? Findings from a British birth cohort. BMJ Open. 2017 Nov 1;7(10):e016708. doi:10.1136/bmjopen-2017-016708. PubMed PMID: 29092899.
* Herceg Z, Ghantous A, Wild CP, Sklias A, Casati L, Duthie SJ, Fry R, Issa JP, Kellermayer R, Koturbash I, Kondo Y, Lepeule J, Lima SCS, Marsit CJ, Rakyan V, Saffery R, Taylor JA, Teschendorff AE, Ushijima T, Vineis P, Walker CL, Waterland RA, Wiemels J, Ambatipudi S, Degli Esposti D, Hernandez-Vargas H. Roadmap for investigating epigenome deregulation and environmental origins of cancer. Int J Cancer. 2018 Mar 1;142(5):874-882. doi: 10.1002/ijc.31014. Epub 2017 Sep 13.
* Teschendorff AE, Zheng SC. Cell-type deconvolution in epigenome-wide association studies: a review and recommendations. Epigenomics. 2017 May;9(5):757-768. doi: 10.2217/epi-2016-0153. Epub 2017 Mar 14. PubMed PMID: 28517979.
* Pan S, Lai H, Shen Y, Breeze C, Beck S, Hong T, Wang C, Teschendorff AE. DNA methylome analysis reveals distinct epigenetic patterns of ascending aortic dissection and bicuspid aortic valve. Cardiovasc Res. 2017 May 1;113(6):692-704. doi: 10.1093/cvr/cvx050. PubMed PMID: 28444195.
* Kiechl S, Schramek D, Widschwendter M, Fourkala EO, Zaikin A, Jones A, Jaeger B, Rack B, Janni W, Scholz C, Willeit J, Weger S, Mayr A, Teschendorff A, Rosenthal A, Fraser L, Philpott S, Dubeau L, Keshtgar M, Roylance R, Jacobs IJ, Menon U, Schett G, Penninger JM. Aberrant regulation of RANKL/OPG in women at high risk of developing breast cancer. Oncotarget. 2017 Jan 17;8(3):3811-3825. doi: 10.18632/oncotarget.14013. PubMed PMID: 28002811; PubMed Central PMCID: PMC5354797.
* Yuan Tian, Tiffany J Morris, Amy P Webster, Zhen Yang, Stephan Beck, Andrew Feber, Andrew E Teschendorff; ChAMP: Updated Methylation Analysis Pipeline for Illumina BeadChips, Bioinformatics, btx513
* Teschendorff AE, Enver T. Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome. Nat Commun. 2017 Jun 1;8:15599. doi: 10.1038/ncomms15599. PubMed PMID: 28569836.
* Zheng SC, Beck S, Jaffe AE, Koestler DC, Hansen KD, Houseman AE, Irizarry RA, Teschendorff AE. Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses. Nat Methods. 2017 Feb 28;14(3):216-217. doi: 10.1038/nmeth.4187. PubMed PMID: 28245219.
* Teschendorff AE, Breeze CE, Zheng SC, Beck S. A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies. BMC Bioinformatics. 2017 Feb 13;18(1):105. doi:10.1186/s12859-017-1511-5. PubMed PMID: 28193155.
* Yang Z, Wu L, Wang A, Tang W, Zhao Y, Zhao H, Teschendorff AE. dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers. Nucleic Acids Res. 2016 Nov 28. pii: gkw1079. [Epub ahead of print] PubMed PMID:27899556.#
* Gao Y, Teschendorff AE. Epigenetic and genetic deregulation in cancer target distinct signaling pathway domains. Nucleic Acids Res. 2016 Nov 29. pii:gkw1100. [Epub ahead of print] PubMed PMID: 27899617.2016
* Paul DS, Teschendorff AE, Dang MA, Lowe R, Hawa MI, Ecker S, Beyan H,Cunningham S, Fouts AR, Ramelius A, Burden F, Farrow S, Rowlston S, Rehnstrom K,Frontini M, Downes K, Busche S, Cheung WA, Ge B, Simon MM, Bujold D, Kwan T, Bourque G, Datta A, Lowy E, Clarke L, Flicek P, Libertini E, Heath S, Gut M,Gut IG, Ouwehand WH, Pastinen T, Soranzo N, Hofer SE, Karges B, Meissner T, Boehm BO, Cilio C, Elding Larsson H, Lernmark Å, Steck AK, Rakyan VK, Beck S, Leslie RD. Increased DNA methylation variability in type 1 diabetes across three immune effector cell types. Nat Commun. 2016 Nov 29;7:13555.
* Breeze CE, Paul DS, van Dongen J, Butcher LM, Ambrose JC, Barrett JE, Lowe R, Rakyan VK, Iotchkova V, Frontini M, Downes K, Ouwehand WH, Laperle J, Jacques PÉ, Bourque G, Bergmann AK, Siebert R, Vellenga E, Saeed S, Matarese F, Martens JH, Stunnenberg HG, Teschendorff AE, Herrero J, Birney E, Dunham I, Beck S. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. Cell Rep. 2016 Nov 15;17(8):2137-2150.
* Yang Z, Wong A, Kuh D, Paul DS, Rakyan VK, Leslie RD, Zheng SC, Widschwendter M, Beck S, Teschendorff AE. Correlation of an epigenetic mitotic clock with cancer risk. Genome Biol. 2016 Oct 3;17(1):205.
* Marie Kalwa, Sonja Hänzelmann, Sabrina Otto, Chao-Chung Kuo, Julia Franzen, Sylvia Joussen, Eduardo Fernandez-Rebollo, Björn Rath, Carmen Koch, Andrea Hofmann, Shih-Han Lee, Andrew E. Teschendorff, Bernd Denecke, Qiong Lin, Martin Widschwendter, Elmar Weinhold, Ivan G. Costa, and Wolfgang Wagner The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation Nucleic Acids Res. 2016 : gkw802v1-gkw802.
* Teschendorff AE, Zheng SC, Feber A, Yang Z, Beck S, Widschwendter M. The multi-omic landscape of transcription factor inactivation in cancer. Genome Med. 2016 Aug 25;8(1):89. doi: 10.1186/s13073-016-0342-8. PubMed PMID: 27562343.
* Morgan E. Levine, Ake T. Lu, Brian H. Chen, Dena G. Hernandez, Andrew B.Singleton, Luigi Ferrucci, Stefania Bandinelli, Elias Salfati, JoAnn E.Manson, Austin Quach, Cynthia D.J.Kusters, Diana Kuh, Andrew Wong, Andrew E. Teschendorff, Martin Widschwendter, Beate R. Ritz, Devin Absher, Themistocles L. Assimes, and Steve Horvath. Menopause accelerates biological aging. PNAS. doi: 10.1073/pnas.1604558113
* Doufekas K*, Zheng SC*, Ghazali S, Wong M, Mohamed Y, Jones A, Reisel D, Mould T, Olaitan A, Macdonald N, Teschendorff AE, Widschwendter M. DNA Methylation Signatures in Vaginal Fluid Samples for Detection of Cervical and Endometrial Cancer. Int J Gynecol Cancer. 2016 Jun 2. [Epub ahead of print] PubMed PMID: 27258725.
* Zheng SC, Widschwendter M, Teschendorff AE. Epigenetic drift, epigenetic clocks and cancer risk. Epigenomics. 2016 Apr 22.
* Teschendorff AE, Jones A, Widschwendter M. Stochastic epigenetic outliers can define field defects in cancer. BMC Bioinformatics. 2016 Apr 22;17:178.
* Chen Y, Breeze CE, Zhen S, Beck S, Teschendorff AE. Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer. Epigenetics Chromatin. 2016 Mar 8;9:10.
* Andrew E Teschendorff, Yang Gao, Allison Jones, Matthias Ruebner, Matthias W. Beckmann, David L. Wachter, Peter A. Fasching & Martin Widschwendter. DNA methylation outliers in normal breast tissue identify field defects that are enriched in cancer.Nature Communications 7, Article number: 10478 doi:10.1038/ncomms10478
* Yang Gao, Allison Jones, Peter A. Fasching, Matthias Ruebner, Matthias W. Beckmann, Martin Widschwendter and Andrew E. Teschendorff* The integrative epigenomic-transcriptomic landscape of ER positive breast cancer.. Clinical Epigenetics.2015, 7:126 doi:10.1186/s13148-015-0159-0
* Teschendorff AE, Lee SH, Jones A, Fiegl H, Kalwa M, Wagner W, Chindera K,Evans I, Dubeau L, Orjalo A, Horlings HM, Niederreiter L, Kaser A, Yang W, Goode EL, Fridley BL, Jenner RG, Berns EM, Wik E, Salvesen HB, Wisman GB, van der Zee AG, Davidson B, Trope CG, Lambrechts S, Vergote I, Calvert H, Jacobs IJ, Widschwendter M. HOTAIR and its surrogate DNA methylation signature indicate carboplatin resistance in ovarian cancer. Genome Med. 2015 Oct 24;7(1):108. doi: 10.1186/s13073-015-0233-4. PubMed PMID: 26497652.
*: Lin ML, Patel H, Remenyi J, Banerji CR, Lai CF, Periyasamy M, Lombardo Y, Busonero C, Ottaviani S, Passey A, Quinlan PR, Purdie CA, Jordan LB, Thompson AM, Finn RS, Rueda OM, Caldas C, Gil J, Coombes RC, Fuller-Pace FV, Teschendorff AE, Buluwela L, Ali S. Expression profiling of nuclear receptors in breast cancer identifies TLX as a mediator of growth and invasion in triple-negative breast cancer. Oncotarget. 2015 May 13. [Epub ahead of print] PubMed PMID: 26280373.
*: Zhanyu Ma, Teschendorff AE, Leijon A, Yuanyuan Qiao, Honggang Zhang, Jun Guo. Variational Bayesian Matrix Factorization for Bounded Support Data. IEEE Trans Pattern Anal Mach Intell. 2015 Apr;37(4):876-889. PubMed PMID: 26353300.
* Teschendorff AE, Yang Z, Wong A, Pipinikas CP, Jiao Y, Jones A, Anjum S, Hardy R, Salvesen HB, Thirlwell C, Janes SM, Kuh D, Widschwendter M.Correlation of Smoking-Associated DNA Methylation Changes in Buccal Cells With DNA Methylation Changes in Epithelial Cancer. JAMA Oncol. 2015 Jul 1;1(4):476-85. doi: 10.1001/jamaoncol.2015.1053. PubMed PMID: 26181258.
* Yang Z, Jones A, Widschwendter M, Teschendorff AE. An integrative pan-cancer-wide analysis of epigenetic enzymes reveals universal patterns of epigenomic deregulation in cancer. Genome Biol. 2015 Jul 14;16(1):140.doi: 10.1186/s13059-015-0699-9. PubMed PMID: 26169266; PubMed Central PMCID: PMC4501092.
* Teschendorff AE, Banerji CR, Severini S, Kuehn R, Sollich P. Increased signaling entropy in cancer requires the scale-free property of protein interaction networks. Sci Rep. 2015 Apr 28;5:9646. doi: 10.1038/srep09646.PubMed PMID: 25919796; PubMed Central PMCID: PMC4412078.
* Teschendorff AE, Li L, Yang Z. Denoising perturbation signatures reveals an actionable AKT-signaling gene module underlying a poor clinical outcome in endocrine treated ER+ breast cancer. Genome Biology 2015, 16:61.
* Banerji CR, Severini S, Caldas C, Teschendorff AE. Intra-Tumour Signalling Entropy Determines Clinical Outcome in Breast and Lung Cancer. PLoS Comput Biol 2015, 11(3):e1004115.
* Yuan T, Jiao Y, de Jong S, Ophoff RA, Beck S, Teschendorff AE. An Integrative Multi-scale Analysis of the Dynamic DNA Methylation Landscape in Aging. PLoS Genet 11(2):e1004996.
* Banerji, C. R., et al. (2015). "β-Catenin is central to DUX4-driven network rewiring in facioscapulohumeral muscular dystrophy." Journal of the Royal Society, Interface / the Royal Society 12(102): 20140797.
* Shen B, Teschendorff AE, Zhi D, Xia J. Biomedical data integration, modeling, and simulation in the era of big data and translational medicine. Biomed Res Int. 2014;2014:731546. doi: 10.1155/2014/731546. Epub 2014 Jul 24. PubMed PMID: 25147813; PubMed Central PMCID: PMC4131419.
* Anjum S, Fourkala EO, Zikan M, Wong A, Gentry-Maharaj A, Jones A, Hardy R, Cibula D, Kuh D, Jacobs IJ, Teschendorff AE, Menon U, Widschwendter M. A BRCA1-mutation associated DNA methylation signature in blood cells predicts sporadic breast cancer incidence and survival. Genome Med. 2014 Jun 27;6(6):47. doi: 10.1186/gm567. eCollection 2014. PubMed PMID: 25067956; PubMed Central PMCID: PMC4110671.
* Gomez-Cabrero D, Abugessaisa I, Maier D, Teschendorff A, Merkenschlager M, Gisel A, Ballestar E, Bongcam-Rudloff E, Conesa A, Tegnér J. Data integration in the era of omics: current and future challenges. BMC Syst Biol. 2014;8 Suppl 2:I1. doi: 10.1186/1752-0509-8-S2-I1. Epub 2014 Mar 13. PubMed PMID: 25032990; PubMed Central PMCID: PMC4101704.
* Teschendorff AE, Liu X, Caren H, Pollard SM, Beck S, Widschwendter M, Chen L. The dynamics of DNA methylation covariation patterns in carcinogenesis. PLoS Comput Biol. 2014 Jul 10;10(7):e1003709. doi: 10.1371/journal.pcbi.1003709. eCollection 2014 Jul. PubMed PMID: 25010556; PubMed Central PMCID: PMC4091688.
* Ma Z, Teschendorff AE, Yu H, Taghia J, Guo J. Comparisons of non-Gaussian statistical models in DNA methylation analysis. Int J Mol Sci. 2014 Jun 16;15(6):10835-54. doi: 10.3390/ijms150610835. PubMed PMID: 24937687; PubMed Central PMCID: PMC4100184.
* Jiao Y, Widschwendter M, Teschendorff AE. A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control. Bioinformatics. 2014 Aug 15;30(16):2360-6. doi: 10.1093/bioinformatics/btu316. Epub 2014 May 2. PubMed PMID: 24794928.
* Steegenga WT, Boekschoten MV, Lute C, Hooiveld GJ, de Groot PJ, Morris TJ, Teschendorff AE, Butcher LM, Beck S, Müller M. Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs. Age (Dordr). 2014 Jun;36(3):9648. doi: 10.1007/s11357-014-9648-x. Epub 2014 May 2. PubMed PMID: 24789080; PubMed Central PMCID: PMC4082572.
* Teschendorff AE, Sollich P, Kuehn R. Signalling entropy: A novel network-theoretical framework for systems analysis and interpretation of functional omic data. Methods. 2014 Jun 1;67(3):282-93. doi: 10.1016/j.ymeth.2014.03.013. Epub 2014 Mar 24. PubMed PMID: 24675401.
* Pan S, Wu D, Teschendorff AE, Hong T, Wang L, Qian M, Wang C, Wang X. JAK2-centered interactome hotspot identified by an integrative network algorithm in acute Stanford type A aortic dissection. PLoS One. 2014 Feb 24;9(2):e89406. doi: 10.1371/journal.pone.0089406. eCollection 2014. PubMed PMID: 24586754; PubMed Central PMCID: PMC3933461.
* Feber A, Guilhamon P, Lechner M, Fenton T, Wilson GA, Thirlwell C, Morris TJ, Flanagan AM, Teschendorff AE, Kelly JD, Beck S. Using high-density DNA methylation arrays to profile copy number alterations. Genome Biol. 2014 Feb 3;15(2):R30. doi: 10.1186/gb-2014-15-2-r30. PubMed PMID: 24490765; PubMed Central PMCID: PMC4054098.
* Morris TJ, Butcher LM, Feber A, Teschendorff AE, Chakravarthy AR, Wojdacz TK, Beck S. ChAMP: 450k Chip Analysis Methylation Pipeline. Bioinformatics. 2014 Feb 1;30(3):428-30. doi: 10.1093/bioinformatics/btt684. Epub 2013 Dec 12. PubMed PMID: 24336642; PubMed Central PMCID: PMC3904520.
* Jones A, Teschendorff AE, Li Q, Hayward JD, Kannan A, Mould T, West J, Zikan M, Cibula D, Fiegl H, Lee SH, Wik E, Hadwin R, Arora R, Lemech C, Turunen H, Pakarinen P, Jacobs IJ, Salvesen HB, Bagchi MK, Bagchi IC, Widschwendter M. Role of DNA methylation and epigenetic silencing of HAND2 in endometrial cancer development. PLoS Med. 2013 Nov;10(11):e1001551. doi: 10.1371/journal.pmed.1001551. Epub 2013 Nov 12. PubMed PMID: 24265601; PubMed Central PMCID: PMC3825654.
* Banerji CR, Miranda-Saavedra D, Severini S, Widschwendter M, Enver T, Zhou JX, Teschendorff AE. Cellular network entropy as the energy potential in Waddington's differentiation landscape. Sci Rep. 2013 Oct 24;3:3039. doi: 10.1038/srep03039. PubMed PMID: 24154593; PubMed Central PMCID: PMC3807110.
* Teschendorff AE. Epigenetic aging: insights from network biology. Aging (Albany NY). 2013 Oct;5(10):719-20. PubMed PMID: 24145222.
* West J, Widschwendter M, Teschendorff AE. Distinctive topology of age-associated epigenetic drift in the human interactome. Proc Natl Acad Sci U S A. 2013 Aug 27;110(35):14138-43.
* Teschendorff AE, West J, Beck S. Age-associated epigenetic drift: implications, and a case of epigenetic thrift? Hum Mol Genet. 2013 Oct 15;22(R1):R7-R15.
* Guilhamon P, Eskandarpour M, Halai D, Wilson GA, Feber A, Teschendorff AE, Gomez V, Hergovich A, Tirabosco R, Fernanda Amary M, Baumhoer D, Jundt G, Ross MT, Flanagan AM, Beck S. Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2. Nat Commun. 2013;4:2166.
* West J, Beck S, Wang X, Teschendorff AE. An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci Rep. 2013;3:1630.
* Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S. A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics. 2013 Jan 15;29(2):189-96.
* West J, Bianconi G, Severini S, Teschendorff AE. Differential network entropy reveals cancer system hallmarks. Sci Rep. 2012;2:802.
* Teschendorff AE, Jones A, Fiegl H, Sargent A, Zhuang JJ, Kitchener HC, Widschwendter M. Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation. Genome Med. 2012 Mar 27;4(3):24.
* Zhuang J, Jones A, Lee SH, Ng E, Fiegl H, Zikan M, Cibula D, Sargent A, Salvesen HB, Jacobs IJ, Kitchener HC, Teschendorff AE, Widschwendter M. The dynamics and prognostic potential of DNA methylation changes at stem cell gene loci in women's cancer. PLoS Genet. 2012 Feb;8(2):e1002517.
* Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, Brown GD, Gojis O, Ellis IO, Green AR, Ali S, Chin SF, Palmieri C, Caldas C, Carroll JS. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature. 2012 Jan 4;481(7381):389-93.
* Teschendorff AE, Severini S. Increased entropy of signal transduction in the cancer metastasis phenotype. BMC Syst Biol. 2010 Jul 30;4:104.
* Russnes HG et al. Genomic architecture characterizes tumor progression paths and fate in breast cancer patients. Sci Transl Med. 2010 Jun 30;2(38):38ra47.
* Teschendorff AE, Menon U, Gentry-Maharaj A, Ramus SJ, Weisenberger DJ, Shen H, Campan M, Noushmehr H, Bell CG, Maxwell AP, Savage DA, Mueller-Holzner E, Marth C, Kocjan G, Gayther SA, Jones A, Beck S, Wagner W, Laird PW, Jacobs IJ, Widschwendter M. Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer. Genome Res. 2010 Apr;20(4):440-6.
* Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, Burleigh A, Delaney A, Gelmon K, Guliany R, Senz J, Steidl C, Holt RA, Jones S, Sun M, Leung G, Moore R, Severson T, Taylor GA, Teschendorff AE, Tse K, Turashvili G, Varhol R, Warren RL, Watson P, Zhao Y, Caldas C, Huntsman D, Hirst M, Marra MA, Aparicio S. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature. 2009 Oct 8;461(7265):809-13.
* Brown LA, Hoog J, Chin SF, Tao Y, Zayed AA, Chin K, Teschendorff AE, Quackenbush JF, Marioni JC, Leung S, Perou CM, Neilsen TO, Ellis M, Gray JW, Bernard PS, Huntsman DG, Caldas C. ESR1 gene amplification in breast cancer: a common phenomenon? Nat Genet. 2008 Jul;40(7):806-7; author reply 810-2.
* Meyer KB, Maia AT, O'Reilly M, Teschendorff AE, Chin SF, Caldas C, Ponder BA. Allele-specific up-regulation of FGFR2 increases susceptibility to breast cancer. PLoS Biol. 2008 May 6;6(5):e108.
* Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, Thorne NP, Costa JL, Pinder SE, van de Wiel MA, Green AR, Ellis IO, Porter PL, Tavare S, Brenton JD, Ylstra B, Caldas C. High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer. Genome Biol. 2007;8(10):R215.
* Blenkiron C, Goldstein LD, Thorne NP, Spiteri I, Chin SF, Dunning MJ, Barbosa-Morais NL, Teschendorff AE, Green AR, Ellis IO, Tavare S, Caldas C, Miska EA. MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype. Genome Biol. 2007;8(10):R214.
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Designed and Coded by Yuan Tian