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Research Event |
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Partner Institute for Computational Biology (PICB) Workshop
The Organization and Control of Metabolic Networks
4-6 August, 2007, Shanghai Institutes for Biological Sciences, CAS
organizers: Andreas Dress, Terence Hwa, Luhua Lai, Yixue Li, Leihan Tang
Preliminary Program
Note: * indicates session discussion leader
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| Saturday, 4 August |
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| Afternoon |
| 3:30 – 7:30 pm |
Registration, PICB Room 315 |
| 4:30 – 5:30 pm |
Room 300: Tutorial on metabolism from a physicist’s viewpoint
Eric Smith, Santa Fe Institute
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| 5:30 – 7:00 pm |
Welcome dinner, Hong Yun-lou restaurant, 567 Zhaojiabang Rd |
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| Evening |
| 7:30 – 10:00 pm |
Introduction and Overview
From molecules to physiology: some basic concepts and issues
Terry Hwa*(华泰立), University of California, San Diego
Systems biology: metabolic networks and metabolomics Xue-Ming Zhao(赵学明), Tianjin University
From gut microbiota to host global metabolism – a top-down systems perspectiveLi-Ping Zhao(赵立平), Shanghai Jiaotong University
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| Sunday, 5 August |
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| Morning |
| 8:30 – 10:30 am |
Metabolic Regulation and Control: Case Studies
Dynamics and design features of a basic regulatory architecture controlling metabolic pathways
Hao Li*(李浩), University of California, San Francisco
Strain improvement by metabolic engineering: riboflavin production as
a case study for systems biology Xue-Ming Zhao*(赵学明), Tianjin University
Towards the production of polyhydroxyalkanoates in recombinant E.coli
Qing-Sheng Qi(祁庆生), Shandong University
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| Break |
| 10:45 – 12:15 pm |
Computational and Theoretical Studies of Metabolism I
The expanded flux variability analysis on metabolic network of E. coli
Qi Ouyang(欧阳颀), Peking University
Metabolic network simplification for quantitative systems level analysis
Lei-Han Tang*(汤雷翰), Hong Kong Baptist University
The arachidonic acid metabolic network: flux balance, control, and implications for network based drug design.
Lu-Hua Lai(来鲁华), Peking University
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| Lunch |
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| Afternoon |
| 2:00 – 4:00 pm |
Metabolic Profiling: Mass Spec and NMR
An example of using LC-MS for metabonomics study
Zong-Wei Cai*(蔡宗苇), Hong Kong Baptist University
Metabolic profiling as a systems pharmacological tool
Wei Jia(贾伟), Shanghai Jiaotong University
Seeking non-biased and holistic in vivo metabonomics tools ---Back to Basics
Hui-Ru Tang(唐惠儒), Wuhan Institute of Physics and Mathematics
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| Break |
| 4:15 – 5:45 pm |
Computational and Theoretical Studies of Metabolism II
What information can be gained from a network's topology, only?
Andreas Dress*, Max-Planck Institute, Shanghai
Topological structure of metabolic pathway networks Yi-Xue Li(李亦学), Shanghai Center for Bioinformatics Technology
Control-first or Metabolism-first in the origin of life?
Eric Smith, Santa Fe Institute
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| Evening |
| 6:00 – 8:00 pm |
Conference dinner,Nanling Resturant , 168 Yue Yang Road, By Yongjia Road |
| after dinner |
Informal discussions on collaborative and funding opportunities |
Monday, 6 August
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| Morning |
| 8:30 – 10:30 am |
Metabolism and Cellular Biology: Stress Response etc.
The regulation of the unfolded protein response
Nai-Sum Wong, University of Hong Kong
Role of hypoxia inducible factor (HIF) in aerobic and anaerobic respiration
Chen Zeng*(曾辰), George Washington University
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| Break |
| 10:45 – 12:15 |
Roundtable Discussion on Future Directions
Facilitators:
Chao Tang(汤超), University of California, San Francisco
Jia-Rui Wu(吴家睿), Shanghai Institute of Biological Science, CAS
Li-Ping Zhao(赵立平), Shanghai Jiaotong University
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| 12:30pm |
Adjourning lunch |
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