Key Laboratory of Computational Biology, CAS
I. News

Unveiling Ceremony and first Academic Committee Meeting for Key Laboratory of Computational Biology, CAS

In the afternoon of March 29, 2010, a unveiling ceremony for Key Laboratory of Computational Biology was held in CAS-MPG Partner Institute for Computational Biology. Prof. Herbert Jaeckle, president of MPG; Prof. Lothar Willmitzer ¨C director of MPI for molecule; Prof. Jiayang LI, vice president of Chinese Academy of Sciences; Prof. Zhibin ZHANG, director of Bureau of Life Sciences; Prof. Yonglong LV, director general of Department for International Cooperation, CAS; Vice presidents of SIBS, Prof. Lin LI and Prof. Xu ZHANG; Prof. Xiaoya CHEN, academician of CAS, director of Academic Committee of the Key Lab; Prof. Changpu SUN, academician of CAS, Institute of Theoretical Physics, CAS; Prof. Liqin SHAO, National Remote Sensing Center of China; Prof. Yaping ZHANG, academician of CAS, director of Kunming Institute of Zoology, CAS; Prof. Yufang SHI, director of Institute of Health Sciences, SIBS, CAS; Prof. Jianping DING, SIBS; Directors of PICB, Prof. Li JIN, Prof. A. Dress, Prof. K. Gerwert, Mr. Xuecai WANG, and PIs from PICB attended the ceremony. The ceremony was moderated by Prof. A. Dress.

Prof. ZHANG Zhibin, director of Bureau of Life Sciences and Biotechnology, CAS, proclaimed a permit of the Key Lab. Prof. LI Lin, vice President of SIBS, proclaimed a letter of appointment for Key Lab director. Prof. Herbert Jaeckle, vice president of Max-Planck Society and Prof. LI Jiayang, vice president of Chinese Academy of Sciences both gave a congratulatory speech and good wishes for future development.

The first Academic Committee Meeting was held after the unveiling ceremony. It moderated by Prof. Xiaoya CHEN, director of the Academic Committee. Firstly, Prof. JIN Li, director of the Key Lab, gave a report about Key Lab. A earnest discussion for building up and development of the Key Lab was taken afterwards. A suggestion from the meeting is 1) to keep the characteristic of the Key Lab. in computational biology. To stick to ¡°dry¡± research mainly and intensify cooperation with other institutes. To make a good effort to provide specific tool and method for life science research. 2) To condense investigative orientation further more and focus on major scientific issue. To bring the investigation to deepness. 3) To make a future plan scientifically and to define a develop map for the Key Lab. To try for being a State Key Lab as soon as possible. 4) The Key Lab should pay a attention to cooperation with national and international range. To find more funds resource independently and actively. To try to take more scientific research mission for State. 5) To build up research team of the Key Lab and find more talented person wherever we can get. To offer better condition to young people for getting a specific training. All in the above is aim to build up a team which is with creative, leading capability for future development in science.

II. About Key Lab

The Computational Biology become a trend in the world currently. More and more scientists pay high attention on it. It also become a very important role in research of life science. There is a consensus that it can be much helpful to life science investigation with computational biology method. By a fund of Chinese Academy of Scienses, Key Laboratory of Computational Biology, CAS was established in 2009. The Key Lab is with a very strong ¡°dry¡± research team. We use mathematics as a main method and high quality computers as a tool to unveiling mystery in life sciences. We also combine with ¡°wet-lab¡± research to focus on aims of Population Genetics, Diseases with Complex Causes£¬Phylogenetic Combinatorics, Spatial Organization of Cellular Protein Networks, Molecular Mechanics and Dynamics of Proteins.

The Key Lab is also a very good platform for scientific cooperation on national and international level. Now, we have cooperation with more than 12 countries and innumerable with internal. We will develop more cooperative relationship to reach newest scientific trend and promote our investigative level.

III. Structure of Key Lab

Key Laboratory of Computational Biology, CAS is running under a director board and a academic committee. Director board is made by SIBS and directors of PICB. Academic committee members are selected from internal scientists. The term of duty will be about 5 years. The director position of the Key Lab is taken by director of supportive institute, PICB. The vice director positions of the Key Lab are taken by vice directors of supportive institute, PICB.

IV. Directors

Director: Li JIN Department of Computational Genmomics, PICB
Vice director: Andreas DRESS Department of Combinatorics and Geometry, PICB
Vice director: Klaus GERWERT Department of Biophysics, PICB
Vice director: Martin VINGRON Department of Regulatory Genomics,PICB
Director of Academic Committee: Xiaoya CHEN Research Professor,SIBS

V.Academic Committee of Key Lab

Direcotor:
    Prof. Xiaoya CHEN, Academician of CAS
Committee member:
    Yaping ZHANG Academician of CAS, director of Kunming Institute of Zoology, CAS
    Changpu SUN Academician of CAS, Institute of Theoretical Physics, CAS
    Yaxiang YUAN Professor, Academy of Mathematics and Systems Science, CAS
    Xu ZHANG Professor, Vice director of Shanghai Institutes for Biological Science, CAS
    Liqin SHAO Professor, National Remote Sensing Center of China
    Jianping DING Professor, Shanghai Institutes for Biological Sciences, CAS
    Yufang SHI Professor, Director of Institute of Health Sciences, SIBS, CAS
    Xinguang ZHU Professor, Shanghai Institutes for Biological Sciences, CAS

VI. Research Departments

Department of Genetics and BioinformaticsDepartment of Combinatorics and GeometryDepartment of BiophysicsDepartment of Computational Systems Biology
Li JIN (Leader)
Haipeng LI
Kun TANG
Jin YANG
Shuhua XU
Philipp KHAITOVICH
Jun YAN

Andreas Dress
Stefan GRUNEWALD
NARDINI Christine

Gerwert Klaus
Axel MOSIG
Frauke GRAETER

VINGRON Martin
Xinguang ZHU


VII. Publications

Andrei Barysenka, Andreas W.M. Dress, Walter Schubert. An Information Theoretic Thresholding Method for Detecting Protein Colocalizations in Stacks of Fluorescence Images. Journal of Biotechnology (2010), doi:10.1016/j.jbiotec.2010.01.009

Leng Y, Chen J, Zhou B, Graeter F. Rupture Mechanism of Aromatic Systems from Graphite Probed with Molecular Dynamics Simulations. Langmuir, DOI: 10.1021/la1006007 (4.097)

Shuhua Xu, Daoroong Kangwanpong, Mark Seielstad, Metawee Srikummool, Jatupol Kampuansai, Li Jin, The HUGO Pan-Asian SNP Consortium. Genetic evidence supports linguistic affinity of Mlabri - a hunter-gatherer group in Thailand. BMC Genetics 2010, 11:18


VIII. Lab Equipments

For dry lab:

ITEM SPECIFICATION ITEM SPECIFICATION
Apple Bio Cluster¡¡ 16 Apple Xserve G5 server nodes¡¡ 175 Workstations¡¡ APPLE Mac MiNi, APPLE, IBM¡¡
Linux Bio Cluster¡¡ 10TFlops , 233 Computing nodes¡¡ 41 laptops IBM, HP, APPLE
233 Linux Servers¡¡ IBM X3755, HP 35 Printer HP LJ-1320N, HP LJ-2015D
Apple Servers¡¡ Apple Xserve¡¡ 39 Monitors ACER, APPLE, LG
Stroages Apple Xraid, IBM DS3200 7 Cooling Systems Daikin,Haier
Data Backup Software BAKBONE Cluster UPS APC
Network Switchs CISCO catalyst ¡¡ ¡¡


For Web Lab

ITEM & SPECIFICATION ITEM & SPECIFICATION
MILLIPOREMilli-Q water system¡¡ Thermo490L, -86o C freezer¡¡
NanoDropND-1000 photometer¡¡ BIO-RADPTC-200
AGILENTAGILENT 2100 ROCHELightCyclerR 480
Thermo719 -86oC¡¡ ZeissAxio observer Z1
INJECTOR 2000 WPI 2000µ4
UV/Visible Spectrophotometers Eppendorf EPMOTION 5070
NanDropND-1000 AGILENTAgilent 2100

Director Assistant: Dr. Jun YAN
Telephone: 021-5492 0474
Secretary : Mrs. Xian XU
Telephone: 021-5492 0452
Address: Room 303, SIBS Building ,320 Yue Yang Rd.,Shanghai, 200031,P. R. China