Publications
- Tracking Microglia Motility in 3D Using a Novel Cosegmentation Approach
H. Xiao, Y. Jin, J. Du, A. Mosig, submitted, 2010.
- Properties of plant microRNAs affect key prediction parameters
V. Thakur, S. Wanchana, M. Xu, R. Bruskiewich, A. Mosig, X. Zhu, submitted, 2010.
- A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes
Guofeng Meng, Axel Mosig, Martin Vingron, BMC Bioinformatics 11(1):267, 2010.
- Customized Strategies for Homology-Based ncRNA Gene Annotation
Axel Mosig, Liang Zhu, Peter F. Stadler, Briefings in Functional Genomics 8:451-460, 2009.
- Tracking cells in Life Cell Imaging videos using topological
alignments
Axel Mosig, Stefan J$auml;ger, Chaofeng Wang, Sumit Nath, Ilker Ersoy, Kannappan Palaniappan, Su-Shing Chen,
Algorithms for Molecular Biology 4:10, 2009.
- Cell Counting for in vivo Flow Cytometer Signals using Wavelet-based Dynamic Peak Picking
David Damm, Chaofeng Wang, Xunbin Wei, Axel Mosig,
The 2nd International Conference on BioMedical Engineering and Informatics, 2009.
- Arthropod 7SK RNA
A. Gruber, C. Kilgus, A. Mosig, I.
Hofacker, W. Hennig, P.F. Stadler, Mol. Biol. Evol. 25 (9), 2008.
- Invertebrate 7SK snRNAs
A. Gruber, D. Koper-Emde, M. Marz, H. Tafer, S. Bernhart,
G. Obernosterer, A. Mosig, I. Hofacker, P.F. Stadler, B. Benecke,
Journal of Molecular Evolution, Vol. 66(2), p.107-15, 2008.
- Structure and Function of the Smallest Vertebrate Telomerase
RNA from Teleost Fish
Mingyi Xie, Axel Mosig, Xiaodong Qi, Yang
Li, Peter F. Stadler, Julian J.-L. Chen, Journal of Biological
Chemistry, Vol. 283 (4), p. 2049-2059, 2008.
- Tanimoto’s Best Barbecue:
Discovering Regulatory Modules using Tanimoto Scores
Peter Menzel, Peter F. Stadler, Axel Mosig, Germ. Conf. Bioinf., 2007.
- U7 snRNAs: A Computational Survey
Manja Lindemeyer,
Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler, Genomics,
Proteomics and Bioinformatics, accepted, 2007.
- Homology Search with Fragmented Nucleic Acid Sequence
Patterns
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler,
Proc. Worksh. Alg. Bioinf. (WABI) 2007, Lecture Notes in Computer
Science 4645, pp. 335-345, 2007
- Evolution of the vertebrate Y RNA cluster,
Axel Mosig,
Meng Guofeng, Bärbel M. R. Stadler, Peter F. Stadler; Theory in
Biosciences Vol. 126(1), pp. 9-14, 2007
- Algorithms for the Combinatorial Best Barbeque
Problem,
Patric R.J. Östergård, Vesa Vaskelaineny,
Axel Mosig; MATCH Commun. Math. Comput. Chem. 58, 309-321,
2007.
- Comparative Analysis of Cyclic Sequences: Viroids and other
Small Circular RNAs,
Axel Mosig, Ivo L. Hofacker, Peter
F. Stadler; Proc. German Conf. Bioinf., Lecture Notes in Informatics
P-83: 93-102, 2006.
- RNAs Everywhere: Genome-Wide Annotation of Structured
RNAs,
The Athanasius F. Bompfünewerer RNA Consortium: Rolf
Backofen, Christoph Flamm, Claufia Fried, Guido Fritzsch, Jörg
Hackermüller, Jana Hertel, Ivo L. Hofacker, Kristin Missal Axel Mosig,
Sonja J. Prohaska, Dominic Rose, Peter F. Stadler, Andrea Tanzer,
Stefan Washietl, Sebastian Will
J. Exp. Zool. B:
Mol. Dev. Evol. 308B: 1-25, 2007.
- fragrep: Efficient Search
for Fragmented Patterns in Genomic Sequences,
A. Mosig, K. Sameith, P. Stadler, Geno. Prot. Bioinfo. 4: 56-60.
2006.
[pdf] [ps]
- Regulatory Signals in Genomic Sequences,
S.J. Prohaska, A. Mosig, P.F. Stadler, Book Chapter,
to appear in: Networks: From Biology to Theory. J.F. Feng, J.Jost, M.P.Qian (editors), 2006.
- Evolutionary Patterns of Non-Coding RNAs,
A.F. Bompfünewerer,
Ch. Flamm,
C. Fried,
G. Fritzsch,
I.L. Hofacker,
J. Lehmann,
K. Missal,
A. Mosig,
B. Müller,
S.J. Prohaska,
B.M.R. Stadler,
P.F. Stadler,
A. Tanzer,
S. Washietl,
Ch. Witwer
Th.Biosci. 123: 301-369 (2005).
[
Publisher’s Page]
Preprint version:
[Abstract]
[Postscript]
[PDF]
[Supplemental Material]
- Discovering cis-Regulatory Modules by Optimizing Barbeques,
A. Mosig, T. Biyikoglu, S.J. Prohaska, P.F. Stadler,
Submitted. 2005.
[pdf] [ps]
- Approximately Matching Polygonal Curves
with Respect to the Frechet Distance,
M. Clausen, A. Mosig,
Computational Geometry: Theory and Applications 30 (2). 2005.
[abstract] [pdf]
- A Generic Framework for Geometrically
Matching Molecular Shapes,
A. Mosig, M. Clausen, Nineteenth International Course and
Conference on the Interfaces among Mathematics, Chemistry & Computer
Sciences (MCC), Dubrovnik, 2004.
[abstract] [pdf]
- Efficient Algorithms for Shape and Pattern
Matching,
PhD thesis, Univ. Bonn, 2004.
[abstract] [pdf]
-
Matching Polygonal Curves using Group Theory,
Poster presented
at the NATO Advanced Study on Computational Noncommutative Algebra and
Applications, Tuscany, Italy, 2003.
A. Mosig
[abstract]
- Approximately
Matching Polygonal Curves with Respect to the Frechet Distance,
19th Europ. Worksh. Comp. Geom., Bonn, Germany, 2003.
M. Clausen, A. Mosig,
[abstract]
- Algorithmen und Datenstrukturen zur effizienten
Konstellationssuche (in German, Algorithms and data structures
for efficient constellation searching),
Master’s thesis,
Univ. Bonn, 2001.
[abstract]
