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  首页 >   生物医学大数据   > 自研算法与工具  

    Molecular Systems Biology  
iNPS
Accurately detecting genome-wide nucleosome positions is important to understanding chromatin remodeling events in gene regulation
TSS predictor
Predict transcription start sites from epigenetic and RNA-seq profiles
eResponseNet
Predict regulatory pathway from weighted network
Adaptive Clustering
Auto-detect cancer subtypes based on heterogeneous high-throughput data
DM_BN
Predict regulatory Bayesian network from gene perturbation data
SeqSpider
Predict regulatory Bayesian network from heterogeneous data
DDI Predictor
Drug-Drug Interaction Predictor
CoCiter
Evaluate function association by significance of co-citation
    Integrative Biology  
Splicing Analyzer by Java and R (SAJR)
Aanalyze splicing and gene expression based on RNA-seq data
R package TimeShift
Software aligning two time series data of gene expression
    Bigdata and Tumor Research  
CHSMiner
CHSMiner provides an integrated GUI environment for the detection, evaluation and visualization of chromosomal homologous segments (CHSs) based on gene content alone.
CHSMiner
CHSMiner provides an integrated GUI environment for the detection, evaluation and visualization of chromosomal homologous segments (CHSs) based on gene content alone.
   
    Population Genomics  
PEAS V1.0
A Package for Elementary Analysis of SNP Data
PEAS V1.0
A Package for Elementary Analysis of SNP Data
   
    Eukaryotic Transcriptomics  
iPSS
Predicting SNP from transcriptome
CIRCfinder
Finding junction reads for circular intronic RNAs
    Plant System Biology  
mCanopy-rice
A package modeling canopy photosynthesis of a rice canopy
fastTracer
A ray tracing package simulating light environment inside a canopy
ePhotosynthesis
A model package simulating C3 photosynthesis process
ePhotosynthesis
A model package simulating C3 photosynthesis process
   
    Evolutionary Genomics  
FastEPRR
This manual describes how to use FastEPRR, an R package for estimating the population recombination rate
msmfs
msmfs is modified Hudson
evolBoosting
This predictor can then be used to predict new samples are whether selected or neutral.
Boosting
Detecting recent positive selection
MFDM
Detecting recent positive selection
MFDM
Detecting recent positive selection
   
    Pattern Discovery in Biology  
Ct3d
Software for image tracing
Ct3d
Software for image tracing
   
    Clinical Genomic Networks  
NTW
Inference of Gene Networks – Application to Bifidobacterium
SPEM
An S-System Parameter Estimation Method for Biological Networks
SPNConverter
A new link between static and dynamic complex network analysis
MIMO
An efficient tool for Molecular Interaction Maps Overlap
    Phylogenetic Combinatorics  
QNet
A software package for estimating phylogenetic networks based on quartets
SurvNet
A bioinformatics web app for identifying network-based biomarkers
SuperQ
A program which computes a phylogenetic super network from a collection of partial phylogenetic trees
BinAligner
A software for biological network alignment
Quartet-Net
A quartet based method to reconstruct phylogenetic networks
Quartet-Net
A quartet based method to reconstruct phylogenetic networks
   
    Human Genetic Variation  
Face Analysis
Software for 3D facial image alignment
Face Analysis
Software for 3D facial image alignment
   
    Computational Systems Genomics  
Signalling Entropy
Signalling Entropy
ISVA
Independent Surrogate Variable Analysis
FEM
FEM can identify interactome hotspots of differential promoter methylation and differential
DART
Denoising Algorithm using Relevance Network Topology to estimate signalling pathway activity
EVORA
Epigenetic Variable Outliers for Risk Prediction Analysis
BMIQ
Beta Mixture Quantile Normalisation Method for Illumina Infinium 450k Methylation Beadchips
EpiMods/FEM
Identification of Functional Epigenetic Modules by integration of DNA methylation and gene expression data
EpiMods/FEM
Identification of Functional Epigenetic Modules by integration of DNA methylation and gene expression data