PICB Publications 2007 (»2006 »2005)
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[1]
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Stefan Grünewald, Kristoffer Forslund, Andreas Dress, and Vincent Moulton.
QNet: An agglomerative method for the construction of phylogenetic
networks from weighted quartets.
Mol. Biol. Evol., 24(2):532-538, 2007.
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[2]
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Jianguo Qian, Andreas Dress, and Yan Wang.
On the dependence polynomial of a graph.
Eur. J. Comb., 28(1):337-346, 2007.
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In press or accepted for publication:
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[1]
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David Bryant and Andreas Dress.
Linearly independent split systems.
Europ. J. Comb., 2007.
to appear.
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[2]
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William Y. C. Chen, Andreas W. M. Dress, and Winking Q. Yu.
Checking the reliability of a linear-programming based approach
towards detecting community structures in networks.
IET Sys. Biol., 2007.
to appear.
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[3]
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Michael Cysouw, Mihai Albu, and Andreas Dress.
Analyzing feature consistency using dissimilarity matrices.
Sprachtypologie und Universalienforschung (STUF), 2007.
to appear.
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[4]
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Andreas Dress.
In: Aspects of Mathematical Modelling, chapter
Phylogenetic analysis, split systems, and boolean functions.
Birkhäuser, 2007.
to appear.
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[5]
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Andreas Dress.
In: Networks: From Biology to Theory, chapter The
category of X-nets.
Springer, 2007.
to appear.
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[6]
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Andreas Dress.
A note on group-valued split and set systems.
Contributions to Discrete Mathematics, 2007.
to appear.
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[7]
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Andreas Dress.
Split decomposition over an abelian group, Part I: Generalities.
Ann. Comb., 2007.
to appear.
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[8]
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Andreas Dress.
Split decomposition over an abelian group, Part II: Group-valued
split systems with weakly compatible support.
Journal Discrete Applied Mathematics, Special Issue on Networks
in Computational Biology, 2007.
to appear.
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[9]
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Andreas Dress, Katharina T. Huber, and Vincent Moulton.
Some uses of the farris transform in mathematics and phylogenetics
- a review.
Ann. Comb., Special issue on Biomathematics, 2007.
to appear.
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[10]
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Andreas Dress, Jan Kåhrström, and Vincent Moulton.
A `non-additive' characterization of -adic norms.
Ann. Comb., 2007.
to appear.
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[11]
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Andreas Dress, Tatjana Lokot, Walter Schubert, and Peter Serocka.
Two theorems about similarity maps.
Ann. of Comb., 2007.
to appear.
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[12]
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Andreas Dress and Mike Steel.
Phylogenetic diversity over an abelian group.
Ann. Comb, Special issue on Biomathematics, 2007.
to appear.
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[13]
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Stefan Grünewald and Katharina Huber.
In: New Mathematical Models for Evolution, chapter
Defining and Identifying Trees.
Oxford University Press, 2007.
to appear.
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[14]
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Stefan Grünewald, Vincent Moulton, and Andreas Spillner.
Consistency of the QNet algorithm for generating planar split
networks from weighted quartets.
Discrete Applied Mathematics, 2007.
to appear.
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[15]
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Stefan Grünewald, Mike Steel, and M. Shel Swensson.
Closure operations in phylogenetics.
Mathematical Biosciences, 7006.
to appear.
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[16]
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Sonja J. Prohaska, Axel Mosig, and Peter F. Stadler.
In: Networks: From Biology to Theory, chapter Regulatory
signals in genomic sequences.
Springer, 2007.
to appear.
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[17]
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Vesa Vaskelainen, Patric R. J. Östergard, and Axel Mosig.
Algorithms for the combinatorial best barbeque problem.
MATCH. Communications in Mathematical and in Computer
Chemistry, 2007.
to appear.
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PICB Publications 2006
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[1]
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Hans-Jürgen Bandelt, Victor Chepoi, Andreas Dress, and Jack Koolen.
Combinatorics of lopsided sets.
Eur. J. Comb., 27(5):669-689, 2006.
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[2]
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Liangyu Chen, Zhenbing Zeng, and Lu Yang.
Parallel difference substitution and inequality proving.
In Proc. MACIS 2006, Mathematics aspects of Computer and
Information Sciences, Beijing, China, 2006.
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[3]
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William Y. C. Chen, Andreas W. M. Dress, and Winking Q. Yu.
Community structures of networks.
In Proc. MACIS 2006, Mathematics aspects of Computer and
Information Sciences, Beijing, China, 2006.
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[4]
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Liuhuan Dong, Yuan Yuan, and Yudong Cai.
Using bagging classifier to predict protein domain structural class.
Journal of Biomolecular Structure and Dynamics, 24(3):239-242,
2006.
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[5]
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Andreas Dress, Katharina T. Huber, Alice Lesser, and Vincent Moulton.
Hereditarily optimal realizations of consistent metrics.
Ann. Comb., 10(1):63-76, 2006.
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[6]
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Andreas Dress and Mike Steel.
Mapping edge sets to splits in trees: the path index and parsimony.
Ann. Comb., 10(1):77-96, 2006.
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[7]
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Stefan Grünewald and Katharina Huber.
A novel insight into the perfect phylogeny problem.
Ann. Comb., 10(1):97-109, 2006.
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[8]
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Wolfgang Hennig.
Bioethics in china.
EMBO Reports, 7:850-854, 2006.
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[9]
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Fu Hongguang, Zhenbing Zeng, and Xiuqin Zhong.
Simplifying trigonometric expressions automatically by computer.
Chinese Journal of Computers, 29(10):1869-1875, 2006.
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[10]
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W Huang, Y He, H Wang, Y Wang, Y Liu, Y Wang, X Chu, Y Wang, L Xu, Y Shen,
X Xiong, H Li, B Wen, J Qian, W Yuan, C Zhang, Y Wang, H Jiang, G Zhao,
Z Chen, and L Jin.
Linkage disequilibrium sharing and haplotype-tagged snp portability
between populations.
Proc Natl Acad Sci U S A, 103(5):1418-1421, Jan 2006.
[ DOI |
http ]
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[11]
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P Jia, T Shi, Y Cai, and Y Li.
Demonstration of two novel methods for predicting functional sirna
efficiency.
BMC Bioinformatics, 7:271-271, 2006.
[ DOI |
http ]
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[12]
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P Khaitovich, J Kelso, H Franz, J Visagie, T Giger, S Joerchel, E Petzold, R E
Green, M Lachmann, and S Pääbo.
Functionality of intergenic transcription: an evolutionary
comparison.
PLoS Genet, 2(10), Oct 2006.
[ DOI |
http ]
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[13]
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A Mosig, K Sameith, and P Stadler.
Fragrep: an efficient search tool for fragmented patterns in genomic
sequences.
Genomics Proteomics Bioinformatics, 4(1):56-60, Feb 2006.
[ DOI |
http ]
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[14]
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Axel Mosig, Ivo L. Hofacker, and Peter F. Stadler.
Comparative analysis of cyclic sequences: Viroids and other small
circular RNAs.
In Robert Giegerich and Jens Stoye, editors, Proc. German
Conference on Bioinformatics, volume P-83 of Lecture Notes in
Informatics, pages 93-102, 2006.
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[15]
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Z Qian, Y D Cai, and Y Li.
Automatic transcription factor classifier based on functional domain
composition.
Biochem Biophys Res Commun, 347(1):141-144, Aug 2006.
[ DOI |
http ]
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[16]
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Z Qian, Y D Cai, and Y Li.
A novel computational method to predict transcription factor dna
binding preference.
Biochem Biophys Res Commun, 348(3):1034-1037, Sep 2006.
[ DOI |
http ]
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[17]
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W Schubert, B Bonnekoh, A J Pommer, L Philipsen, R Böckelmann, Y Malykh,
H Gollnick, M Friedenberger, M Bode, and A W Dress.
Analyzing proteome topology and function by automated
multidimensional fluorescence microscopy.
Nat Biotechnol, 24(10):1270-1278, Oct 2006.
[ DOI |
http ]
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[18]
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Jun Yan, Adlai Burman, Calen Nichols, Linda Alila, Louise C. Showe, Bert B.
Showe, Michael K. Boyer, Brian M. Barnes, and Thomas G. Marr.
Detection of differential gene expression in brown adipose tissue of
hibernating arctic ground squirrels with mouse microarrays.
Phys. Genomics, 25(346-353):346-353, 2006.
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[19]
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Lu Yang and Zhenbing Zeng.
A spatial geometric constraint problem solved by invariant method.
In Francisco Botana and Eugenio Roanes-Lozano, editors, Proc.
Sixth International Workshop on Automated Deduction in Geometry (ADG),
pages 151-159, 2006.
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[20]
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Q Zan, B Wen, Y He, Y Wang, S Xu, J Qian, D Lu, and L Jin.
Complete sequence data support lack of balancing selection on prnp in
a natural chinese population.
J Hum Genet, 51(5):451-454, 2006.
[ DOI |
http ]
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[21]
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Zhenbing Zeng and Hongguang Fu.
Build interactive mathematics web services using ajax technology and
automated reasoning tools.
In Proc. 11th Asian Technology Conference on Mathematics, pages
119-131, 2006.
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[22]
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J Zhao, L Jin, and M Xiong.
Test for interaction between two unlinked loci.
Am J Hum Genet, 79(5):831-845, Nov 2006.
[ DOI |
http ]
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PICB Publications 2005
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[1]
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Drago Bokal, Gunnar Brinkmann, and Stefan Grünewald.
Chromatic-index-critical graphs of orders 13 and 14.
Discrete Math., 300:16-29, 2005.
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[2]
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Andreas Dress.
Δ additive and Δ ultra-additive maps, Gromov's trees,
and the Farris transform.
Discr. Appl. Math., 146:51-73, 2005.
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[3]
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Chunshen Ni, Baocun Shun, Yumei Feng, Danfang Zhang, Xiaoqing Feng, and Liuhuan
Dong.
Primary research of linear differential model for the genetic
regulatory networks of gene related to breast cancer metastasis.
Progress in Biochemistry and Biophysics, 32:1165-1172, 2005.
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[4]
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S Shen, L Dong, K Wang, and G Hu.
Sma: An efficient tool for large-scale multiple alignment.
Conf Proc IEEE Eng Med Biol Soc, 3:2836-2838, 2005.
[ http ]
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