In silico Transcriptome (iTranscriptome)

Geo-sequencing: 3D Transcriptome of mouse embryo at gastrulation

Querying the interested gene

Please input the interested gene symbol:

Please input the cutoff of p value for GBA analysis:

Top 10 genes with the highest correlation to query gene:

To download all the related data, please click here.

Key features

  • - High resolution
  • - 2D & 3D visualization


  • - More sensitive
  • - Searchable web service

Accessing iTranscriptome

Pattern search by gene
Querying and displaying the expression pattern of a query gene in either a corn plot or a 3D embryo model
Gene search by gene
Searching for genes that share similar expression patterns of a query gene.
Gene search by pattern
Searching for genes using a query pattern (There are 20 predefined patterns).
Zipcode Mapping
Identifying potential regions in the reference embryo from which a sample is derived based on sample’s transcriptome data.