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DTWO: a modified dynamic time warping algorithm to align gene expression time series
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R package
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Comprehensive analysis of human, chimpanzee and macaque brain transcriptomes by RNA-Seq (submitted;2009)
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Dataset 1
] solexa sequencing data for pooled human sample 1
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Dataset 2
] solexa sequencing data for pooled human sample 2
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Dataset 3
] solexa sequencing data for pooled chimpanzee sample
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Dataset 4
] solexa sequencing data for pooled macaque sample
Transcriptional neoteny in the human brain (2009)
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Supplementary Information
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R functions
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Example R code and data
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HG_U133P2_Ensembl_Custom_CDF
] No mask; 15,964 genes with >8 probes
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HG_U133P2_HC_Masked_Ensembl_Custom_CDF
] CDF with human + chimpanzee mask; 11,956 genes with >8 probes
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HG_U133P2_HCR_Masked_Ensembl_Custom_CDF
] CDF with human + chimpanzee + rhesus mask; 3,747 genes with >8 probes
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HuGene1.0_HCR_Masked_Affymetrix_CDF
] CDF with human + chimpanzee + rhesus mask; 20,882 genes with >8 probes
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MG430_2_MS_Custom_Masked_Custom_CDF
] CDF with Mus musculus + Mus spretus mask; 12,346 genes with >8 probes
Sequence features associated with microRNA strand selection in humans and flies (2009)
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Readme file
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Dataset 1
] Small RNA solexa sequencing data from 20 male individuals aged between 14 and 58 years
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Dataset 2
] Technical replication of Dataset 1
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Dataset 3
] Biological replication from a single 25-year-old individual
Estimating accuracy of RNA-Seq and microarrays with proteomics (2009)
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Dataset 1
] RNA-Seq data from 5 male individuals aged between 8 and 53 years. (The number after the colon is the count of the sequence)
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Dataset 2
] RNA-Seq data from 5 male individuals aged between 16 and 54 years
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Dataset 3
] Technical replication of Dataset 1
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Dataset 4
] Technical replication of Dataset 2
2007 Comparative Biology Group
